PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59779
Common NameMICPUN_59779
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family CAMTA
Protein Properties Length: 1565aa    MW: 163846 Da    PI: 6.212
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59779genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1161.51.5e-50551712117
   CG-1   2 lkekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLe 103
             ++++rwlkn+e++++L n++++ ++l  +++ rp+ g+++L++rk vr+frkDG+ w+kkkdgktvrE+hekLKvg+ve+l+cyYah+ en  fqrrcywlL+
  59779  55 NQSRTRWLKNTEVCDMLLNYRSYGFALskTAPVRPPAGTIFLFDRKAVRFFRKDGHDWQKKKDGKTVRETHEKLKVGNVELLNCYYAHAAENDRFQRRCYWLLD 158
            3459******************9988766899************************************************************************ PP

   CG-1 104 eelekivlvhylev 117
            ++ e +vlvhyl++
  59779 159 SD-EGVVLVHYLDT 171
            **.********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143767.26950177IPR005559CG-1 DNA-binding domain
SMARTSM010768.1E-5753172IPR005559CG-1 DNA-binding domain
PfamPF038598.7E-4957170IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.66E-14694780IPR014756Immunoglobulin E-set
CDDcd002042.93E-129821074No hitNo description
SuperFamilySSF484032.8E-159821076IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-159831077IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.7599851086IPR020683Ankyrin repeat-containing domain
PfamPF127964.6E-79941075IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.91510181050IPR002110Ankyrin repeat
SMARTSM002484.4E-510181047IPR002110Ankyrin repeat
PROSITE profilePS500967.69315001528IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1565 aa     Download sequence    Send to blast
MYQPRVSPSY NAGGSDSPAT GSDGGFGGVS ATALIMPEAE GPDGSTRAHV IEMLNQSRTR  60
WLKNTEVCDM LLNYRSYGFA LSKTAPVRPP AGTIFLFDRK AVRFFRKDGH DWQKKKDGKT  120
VRETHEKLKV GNVELLNCYY AHAAENDRFQ RRCYWLLDSD EGVVLVHYLD TTMVVGGRGG  180
AKGAGLGLAP GGSAPGSNSG TTDGEDQNGF RNLFRYASGM SQYSGSGYEE VASMGGMSGG  240
SPMMQSPARP GQYHPEVYQQ YSQQQQAVGG QYGHHGYGAP PTHHYPHGDS DPHALYHAAQ  300
EQFNGVAESE SWFNSVLASE DEAGEESGPG GPGRMSGVHR RASATLVDAA GRAVPFRQPS  360
SGRAVPFREG SNRSILSIGS GPPLDHGYFE MGQDESSNGP HFDLLKEFAV DQIAEAQGIK  420
VEGMPVESAA AAAAAAAAAG PNIGTAFPGE YRSDIADGVT SMAELESKIA SLKETLVRVA  480
SVNADASPEQ VDRLEQDMAA LERGAAAMRP AAGSVGGGGG GAKPGHRRGS SFGSGTRARP  540
PRARPVIWDG DDKDEDDADR EDDGDDDDDD GDDNEETAEG ALSPLAKAAA ATRRPRGADG  600
GRGAHRAAAL AAQQQQRMAG FPRVPSHPSE GSEMDAEMNN SDGDNGDISP RAPSPALRAA  660
QMRAAAEASH ARYNRARQPF IPPAQQGSPI LWAIDDFSPE WDTETGGGKV LVTGTPRPGL  720
PEGLYLCCVF GDVEVPAEQV SPGVLRCRAP PMNAGRVPFY ISCLGSGKRP ASDIRTFEYR  780
EAGAGGARDK RAAEIRLTSG VTERDFQLRL VHLLIGADRS SKASGGGGPG GPGGPGGGGG  840
GGGGGSTASG NGPSDGKGSG GSGGNTSSPD NRNGGGSSES RDVHGSPASP GRSGSQSGGL  900
GGGAGAGFTR RAVAALNLGA DPALDPNMSN LSDEDVGKVF KTALEARLRH AIAAEAKHHR  960
ARAEGIVPNP TYVQPKSAYA RVDAGGMGLI HCVAALGMKW AIPAMTKCGC DVNQPDRRNR  1020
TALHWAAAKG HEDTVATLLA SGANIRAMAR WGAGGYTAAD LAAALGHGGI AAYISETSLA  1080
ASLSNISLYG GAQGPATGRS LRSASFDRKR QQQQQQVQGL TTPLMSGAGV TPPGVTPGAG  1140
PTANRTGRAQ RDRVKAVPMR SLLLATETEV TATDAVTSQT EVETEAEFME GGGTSTERRE  1200
AVAAGMIQLA FRKHSVRRRK ARKKGGELNT VTEGVETGAA PRTGADRDVK KDVKKVVKKA  1260
EKAAQKITDS LRSLKVSKTA TGAAPELGKR RLGERSGGGL HHSTIPESEA MDVSVEEAAG  1320
SPPEGAEGAD FAMRSTSGGE EALAALRRRI AQLQERAVAL QGEIRAADYR GRQDRLQTLM  1380
PGGHHQRRRA ADIMQLISAG VGGGGGGGGG GEDGAAAARV VDWERAMLER ANSSKDSLDE  1440
VYRSGGGASN RLVKSATLRG RRQSHKSHSD DGNDSNKRST SDTNNNDDDS DDDEEEENVQ  1500
QAVARIQAIT RSREARDQYL RLRMVTQSMQ ERRDAIARGE AVKREEDEDG LDDVDVEEDE  1560
EEDE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013280.0CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002503449.10.0camta-like transcriptional regulator
TrEMBLC1E9N00.0C1E9N0_MICSR; Camta-like transcriptional regulator
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP513289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.23e-42Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]